Lifeboat Foundation

Scientists in Germany and the US have predicted the most topologically complex knot ever found in a protein using AlphaFold, the artificial intelligence (AI) system developed by Google’s DeepMind. Their complete analysis of the data produced by AlphaFold also revealed the first composite knots in proteins: topological structures containing two separate knots on the same string. If the discovered protein knots can be recreated experimentally it will serve to verify the accuracy of predictions made by AlphaFold.

Proteins can fold to form complex topological structures. The most intriguing of these are protein knots – shapes that would not disentangle if the protein were pulled from both ends. Peter Virnau, a theoretical physicist at Johannes Gutenberg University Mainz, tells Physics World that there are currently around 20 to 30 known knotted proteins. These structures, Virnau explains, raise interesting questions around how they fold and why they exist.

A protein’s shape can be closely linked with its function, but while there are a few theories on the functionality and purpose of protein knots there is little hard evidence to back these up. Virnau says that they might help to keep the proteins stable, by being particularly resistant to thermal fluctuations, for instance, but these are open questions. While protein knots are rare, they also appear to be highly preserved by evolution.

A new study corrects an important error in the 3D mathematical space developed by the Nobel Prize-winning physicist Erwin Schrödinger and others, and used by scientists and industry for more than 100 years to describe how your eye distinguishes one color from another. The research has the potential to boost scientific data visualizations, improve TVs and recalibrate the textile and paint industries.

“The assumed shape of color space requires a paradigm shift,” said Roxana Bujack, a computer scientist with a background in mathematics who creates scientific visualizations at Los Alamos National Laboratory. Bujack is lead author of the paper by a Los Alamos team in the Proceedings of the National Academy of Sciences on the mathematics of color perception.

Continue reading “Math error: A new study overturns 100-year-old understanding of color perception” »

Using a robot confined to a sphere, scientists have proven bodies can move freely in curved spaces without pushing against anything.

To form a celestial object, start with a gas cloud and add gravity. Then, it gets complicated.

Accretion is one of the most fundamental processes in the cosmos. It is a universal phenomenon triggered by gravity, and the process by which bits of matter accumulate and coalesce with more bits of matter. It works inexorably on all scales to attract and affix smaller things to bigger things, from the tiniest dust grains to supermassive black holes.

Accretion creates everything there is: galaxies, stars, planets, and eventually, us. It is the reason the universe is filled with a whole bunch of somethings instead of a whole lot of nothing.

Continue reading “The physics of accretion: How the universe pulled itself together” »

Science, Technology, Health, Physics, Chemistry stay Updated.

Scientists from The Australian National University (ANU) and James Cook University (JCU) have identified an “exquisite” natural mechanism that helps plants limit their water loss with little effect on carbon dioxide (CO₂) intake—an essential process for photosynthesis, plant growth and crop yield.

A relic, a fossil, and a halo are among the bizarre features that defy existing theories, according to a new study.

Analysing pendulum videos, the artificial intelligence tool identified variables not present in current mathematics.

An artificial intelligence tool has examined physical systems and not surprisingly, found new ways of describing what it found.

How do we make sense of the universe? There’s no manual. There’s no prescription.

Continue reading “Artificial intelligence discovers new physics variables!” »

A closer look at gravitational wave data reveals 10 overlooked mergers, including one between black holes that probably found each other late in life.

In February 2020, four distinguished astrophysicists — Jonathan Carroll-Nellenback, Adam Frank, Jason Wright, Caleb Scharf — suggested that Earth may have remained unvisited by space-faring civilizations all the while existing in a galaxy of interstellar civilizations seeded by moving stars that spread alien life, offering a solution to the perplexing Fermi paradox. They concluded that a planet-hopping civilization could populate the Milky Way in as little as 650,000 years.

“It’s possible that the Milky Way is partially settled, or intermittently so; maybe explorers visited us in the past, but we don’t remember, and they died out,” says Jonathan Carroll-Nellenback, an astronomer at the University of Rochester and his collaborators in a 2019 study that suggests it wouldn’t take as long as thought for a space-faring civilization to planet-hop across the galaxy, because the orbits of stars can help distribute life, offering a new solution to the Fermi paradox. “The solar system may well be amid other settled systems; it’s just been unvisited for millions of years.”